Dear Forums, I'm trying to run a higher level FEAT analysis (through the FSL gui) using single run level 1 feat files as inputs. The first part of the script seems to run fine, but then i encounter several errors:
--------------- ERROR 1: /usr/local/sharity/var/mount/Goldman.Data/BIAC/Percept.02/Data/FSL/33005/run01.feat/reg_standard/mask ** ERROR: nifti_image_read(0): can't open header file ** ERROR: nifti_image_open(0): bad header info Error: failed to open file 0 avwmerge: No such file or directory
mkdir inputreg
/usr/local/packages/fsl/bin/avwmaths_16SI ../mask -mul 14 -Tmean masksum ** ERROR: nifti_image_read(../mask): can't open header file ** ERROR: nifti_image_open(../mask): bad header info Error: failed to open file ../mask Error:: FslCloneHeader: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/avwmaths_16SI masksum -thr 14 -add masksum masksum ** ERROR: nifti_image_read(masksum): can't open header file ** ERROR: nifti_image_open(masksum): bad header info Error: failed to open file masksum Error:: FslCloneHeader: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 28 masksum_overlay ** ERROR: nifti_image_read(masksum): can't open header file ** ERROR: nifti_image_open(masksum): bad header info Error: failed to open file masksum ERROR: Could not open image masksum Image Exception : #22 :: Failed to read volume masksum
/usr/local/packages/fsl/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png ** ERROR: nifti_image_read(masksum_overlay): can't open header file ** ERROR: nifti_image_open(masksum_overlay): bad header info Error: failed to open file masksum_overlay ERROR: Could not open image masksum_overlay Image Exception : #22 :: Failed to read volume masksum_overlay
/usr/local/packages/fsl/bin/avwmaths_16SI masksum -mul 0 maskunique ** ERROR: nifti_image_read(masksum): can't open header file ** ERROR: nifti_image_open(masksum): bad header info Error: failed to open file masksum Error:: FslCloneHeader: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/avwmaths_16SI 0 -mul -1 -add 1 -mul 1 -add maskunique maskunique ** ERROR: nifti_image_read(0): can't open header file ** ERROR: nifti_image_open(0): bad header info Error: failed to open file 0 Error:: FslCloneHeader: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/avwmaths mask -Tmin mask ** ERROR: nifti_image_read(mask): can't open header file ** ERROR: nifti_image_open(mask): bad header info Error: failed to open file mask Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/avwmerge -t mean_func
ERROR 3: /usr/local/sharity/var/mount/Goldman.Data/BIAC/Percept.02/Data/FSL/33005/run01.feat/reg_standard/stats/cope1.nii.gz ** ERROR: nifti_image_read(0): can't open header file ** ERROR: nifti_image_open(0): bad header info Error: failed to open file 0 avwmerge: No such file or directory
/usr/local/packages/fsl/bin/avwmaths cope1 -mas mask cope1 ** ERROR: nifti_image_read(cope1): can't open header file ** ERROR: nifti_image_open(cope1): bad header info Error: failed to open file cope1 Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
/usr/local/sharity/var/mount/Goldman.Data/BIAC/Percept.02/Data/FSL/33005/run01.feat/reg_standard/stats/varcope1.nii.gz ** ERROR: nifti_image_read(0): can't open header file ** ERROR: nifti_image_open(0): bad header info Error: failed to open file 0 avwmerge: No such file or directory
/usr/local/packages/fsl/bin/avwmaths varcope1 -mas mask varcope1 ** ERROR: nifti_image_read(varcope1): can't open header file ** ERROR: nifti_image_open(varcope1): bad header info Error: failed to open file varcope1 Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
/usr/local/packages/fsl/bin/featregapply ------------------------------------------- I thought it was a problem with subject 33005, but when I remove this subject from the analysis, I get the same errors but for subject 33000.
Any ideas on what file it's trying to find or what's going wrong here?
FSL script hanging
Posted - Mar 29 2007 : 1:26:55 PM
