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tankersley
BIAC Alum

USA
143 Posts
Posted - Mar 31 2006 :  11:10:54 AM  Show Profile  Reply with Quote
I'm on \\Katz\Data\ExecInfo.09

I ran rm -fr /data/users/tankersl/bputil/jobs/exam

on almost every single one of my subjects last night.

The output from fmriqa_biac is an empty index.html file, but it produces about half of the .png files that also go into the QA folder.
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syam.gadde
BIAC Staff

USA
421 Posts
Posted - Mar 31 2006 :  11:17:36 AM  Show Profile  Reply with Quote
I was wondering more about the disk quota on
ExecInfo.09. It looks like there should be
plenty of space in /data/users.
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tankersley
BIAC Alum

USA
143 Posts
Posted - Mar 31 2006 :  11:19:12 AM  Show Profile  Reply with Quote
Sam:

How can I tell if I'm over disk quota?

Dharol
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syam.gadde
BIAC Staff

USA
421 Posts
Posted - Mar 31 2006 :  11:25:37 AM  Show Profile  Reply with Quote
I don't know what your disk quota is exactly
(Francis or perhaps your PI would know).
But you can tell how much disk space the
experiment is using in Windows by right-clicking
on the experiment directory, and selecting
Properties. It will start counting and eventually
should show you the amount of disk space used.

I don't know that this is the issue, it's just
one thing to check. Another thing is to look
through the bputil logs in question (located in
/data/users/LOGIN/bputil/logs) to see if there
are any funny things in there.
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tankersley
BIAC Alum

USA
143 Posts
Posted - May 18 2006 :  3:02:58 PM  Show Profile  Reply with Quote
I am continuing to have the same problem with bputil that I posted on back in February:
I will ask bputil to perform the following processes:

6. QA
1. Time correction
2. Motion correction
3. Normalization and coregistration
5. Smoothing.

bputil will run 6,1,2, and 3 and produce
QA files
arun files
rarun files
ncrarun files

But it FAILS TO PRODUCE sncrarun files.

Then I go back and ask bputil only to perform the smoothing, but it just produces files called 'srun'.

QUESTION 1: How come I'm not getting the sncrarun files?

QUESTION 2: Is there a way to go back and get bputil to smooth over processed files without rerunning all the steps again?

Any help is much appreciated!

Thanks.
Dharol
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jimmy.dias
BIAC Alum

USA
210 Posts
Posted - May 18 2006 :  3:15:14 PM  Show Profile  Visit jimmy.dias's Homepage  Reply with Quote
Hi Dharol,

Does the script you looked at to try and debug this issue contain the 'smooth' command?

Jimmy
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tankersley
BIAC Alum

USA
143 Posts
Posted - May 18 2006 :  3:18:47 PM  Show Profile  Reply with Quote
Jimmy:

I have only interacted with the interface you created for the newest version of bputil.
I have no idea how to do anything in UNIX. I'm willing to learn if you want to point me to a UNIX tutorial or explain how to open this script. ??

Sorry.

Dharol
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jimmy.dias
BIAC Alum

USA
210 Posts
Posted - May 18 2006 :  3:24:30 PM  Show Profile  Visit jimmy.dias's Homepage  Reply with Quote
http://www.ee.surrey.ac.uk/Teaching/Unix/ should help. Tutorials One and Two should give you enough information to navigate to the file and list its contents.

You'll want to change to directory /data/users/tankersl/bputil/scripts and open up the script you last submitted (date and time is in the filename).

Jimmy
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