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jim.voyvodic
BIAC Faculty
138 Posts |
 Posted - May 22 2006 : 4:47:42 PM
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Some users have reported problems running BPUTIL on Golgi, where their jobs terminate partway through. This problem is under investigation, but in the meantime we have created a simple script on Golgi to help users finish incomplete bputil jobs without having to restart the whole preprocessing job from the beginning.
The script is called, BPRERUN on Golgi.
To use it, log into Golgi and type:
bprerun
This will give you a short description of how to use the command.
Basically, you need to specify the name of the bputil job script that failed, and which line number you want to restart it on.
To find a list of your bputil scripts, type:
bprerun show
To view line numbers in a particular script, type:
bprerun scriptname (where scriptname is your .SH file name)
To view line numbers in your most recent bputil script, type:
bprerun recent
To restart your script at a particular line, type:
bprerun scriptname linenumber go
(the 'go' is needed to actually start execution).
For example,
bprerun 12345_20060522.sh 25 go
A more complete description of this issue is available in Dharol's document at:
http://hawking.biac.duke.edu/docs/BPUTIL_BPRERUN.doc
Jim |
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bprerun for bputil errors
