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Carpenter
New Member
16 Posts |
 Posted - Nov 26 2007 : 10:58:46 AM
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I'm getting an error when I try to load my behavioral files into fsl that says:
can't read "fmri(overwrite_yn)": no such element in array
can't read "fmri(overwrite_yn)": no such element in array
while executing
"puts $channel "
##########################################################
# Now options that don't appear in the GUI
# Alternative example_func imag..."
(procedure "feat5:write" line 680)
invoked from within
"feat5:write $w 1 0 0 $fmri(feat_filename) "
(procedure "feat5:setup_model_preview" line 6)
invoked from within
"feat5:setup_model_preview .r"
invoked from within
".wdialog1.btns.b.view invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 22)
invoked from within
"tk::ButtonUp .wdialog1.btns.b.view"
(command bound to event)
This error is showing up even for design files that had run successfully. Any clue what may be going on? |
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Dichter
BIAC Faculty
190 Posts |
Posted - Nov 26 2007 : 11:14:55 AM
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I believe this is part of the problems with the FSL 4.0.2 patch:
On Wed, 2007-11-21 at 09:37 +0000, Steve Smith wrote:
> Sorry - there was a file missing from the patch - the full fsl-4.0.2
> downloads are fine, but the patch files were missing the attached
> file. Please put the attached file in:
>
> cp featconf $FSLDIR/etc/fslconf/feat.tcl |
Gabriel S. Dichter, PhD
UNC Departments of Psychiatry & Psychology
http://www.can.unc.edu/ |
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mullette-gillman
Junior Member
USA
40 Posts |
Posted - Nov 26 2007 : 11:51:41 AM
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I had written --> Is that file available somewhere? I was having the same problems last night.
the file was emailed out through the FSL list on November 21st. |
Edited by - mullette-gillman on Nov 26 2007 3:03:41 PM |
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josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - Nov 26 2007 : 11:53:35 AM
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Which machine are you running this from? (Golgi, the cluster, meehl, etc....)
-Josh |
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Carpenter
New Member
16 Posts |
Posted - Nov 26 2007 : 1:06:40 PM
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| that was through the GUI on meehl |
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josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - Nov 27 2007 : 08:22:49 AM
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Meehl has been re-patched to FSL version 4.0.2. The cluster is still running 4.0.1.
If anyone continues to see this error, let us know.
-Josh |
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Dichter
BIAC Faculty
190 Posts |
Posted - Nov 27 2007 : 1:45:51 PM
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| It will probably be a good idea to update the cluster to 4.0.2, because 4.0.1 has an error with multiple groups FLAME analyses (thanks Chris for pointing that out from the FSL listserve). |
Gabriel S. Dichter, PhD
UNC Departments of Psychiatry & Psychology
http://www.can.unc.edu/ |
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wang
BIAC Alum
USA
57 Posts |
Posted - Nov 27 2007 : 2:15:57 PM
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| What was the error about fsl 4.0.1? Was it some math error that requires us to rerun the third level analysis or it just has some bugs? Did the fsl 4.0.2 fix empty EVs problem? Thanks. |
lihong |
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Dichter
BIAC Faculty
190 Posts |
Posted - Nov 27 2007 : 2:18:08 PM
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| I haven't tested this, but my understanding is that any 3rd-level analyses with 2+ groups analyzed with 4.0.1 would have to be rerun. I wasn't having trouble with empty EVs in 4.0. |
Gabriel S. Dichter, PhD
UNC Departments of Psychiatry & Psychology
http://www.can.unc.edu/ |
Edited by - Dichter on Nov 27 2007 2:18:48 PM |
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petty
BIAC Staff
USA
453 Posts |
Posted - Nov 27 2007 : 2:23:17 PM
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quote:
Originally posted by wang
What was the error about fsl 4.0.1? Was it some math error that requires us to rerun the third level analysis or it just has some bugs? Did the fsl 4.0.2 fix empty EVs problem? Thanks.
as i understood, if you defined multiple groups, their variances weren't actually kept seperate (which is what should happen when you define more than 1). so re-running the 3rd level is a good idea.
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wang
BIAC Alum
USA
57 Posts |
Posted - Nov 27 2007 : 2:39:25 PM
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Thanks a lot Gabriel and Chris. Would very appreciate an anouncement once the Cluster is upgraded to FSL 4.0.2, Josh. Thanks.
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lihong |
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Topic |
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FSL error: can't read "fmri(overwrite_yn)"
