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Screensize: 640 x 480 800 x 600 1024 x 768 1280 x 1024 UserName: Password: Format Mode: Basic  Help  Prompt  Format: Font Andale Mono Arial Arial Black Book Antiqua Century Gothic Comic Sans MS Courier New Georgia Impact Lucida Console Script MT Bold Stencil Tahoma Times New Roman Trebuchet MS Verdana   Size 1 2 3 4 5 6   Color Black Red Yellow Pink Green Orange Purple Blue Beige Brown Teal Navy Maroon LimeGreen Message: * HTML is OFF * Forum Code is ON Smilies [quote][i]Originally posted by diaz[/i] [br]If you're interested in overlaying functionals on skull-stripped anatomicals, I found BSE easier to use than ems. I downloaded BSE to P:\user_scripts\BSE To use the program add the path to the program, and type "bse3" at the matlab prompt. The images need to be in "Analyze" format, and you'll want to change the "Location of BSE3.exe" to P:\user_scripts\BSE Displaying the results (with Showsrs) is useful to see how good the program did the skull-stripping. To get better results, try changing the edge detector sigma a couple hundreths of a point in either direction. More documentation can be found at http://neuroimage.usc.edu/BSE/ and supporting journal articles can be found under \\gall\docs\PDF Library\Methods-fMRI\BSE Michele [/quote]   Check here to include your profile signature. Check here to subscribe to this topic.