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diaz
BIAC Alum

USA
212 Posts
Posted - May 09 2003 :  11:01:18 AM  Show Profile  Reply with Quote
If you're interested in overlaying functionals on skull-stripped anatomicals, I found BSE easier to use than ems. I downloaded BSE to P:\user_scripts\BSE To use the program add the path to the program, and type "bse3" at the matlab prompt. The images need to be in "Analyze" format, and you'll want to change the "Location of BSE3.exe" to P:\user_scripts\BSE Displaying the results (with Showsrs) is useful to see how good the program did the skull-stripping. To get better results, try changing the edge detector sigma a couple hundreths of a point in either direction. More documentation can be found at http://neuroimage.usc.edu/BSE/ and supporting journal articles can be found under \\gall\docs\PDF Library\Methods-fMRI\BSE

Michele
Michele T. Diaz, Ph.D.
Associate Director
Brain Imaging and Analysis Center
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