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 Freesurfer updated to v 4.0.2

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josh.bizzell Posted - Apr 01 2008 : 2:13:01 PM
I have updated Freesurfer on all of the nodes from version 4.0.0 to version 4.0.2. Please let me know if you encounter any errors.

Note: It appears that Freesurfer is still crashing on node6. I have yet to figure out what is causing this, but in the mean time, you should avoid node6 when running Freesurfer jobs.

-Josh
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josh.bizzell Posted - Sep 19 2008 : 5:11:15 PM
By the way, I fixed the permissions problem with node6, so you should feel free to run Freesurfer on any node.

-Josh
josh.bizzell Posted - Sep 19 2008 : 4:32:22 PM
All,

I'm thinking about updating Freesurfer to version 4.0.5 soon, maybe on Monday (Sept. 22). It'd be best if there were no Freesurfer jobs running when I do this, so unless it's a problem, please don't submit any new jobs that might still be running on Monday.

Thanks!
Josh
josh.bizzell Posted - Sep 05 2008 : 10:57:47 AM
Amy,

From the interact queue, typing the following command will tell you which version of freesurfer is being used:
cat $FREESURFER_HOME/build-stamp.txt

Or, you can add that line to your grid engine scripts to get it to print the version to your log file.

-Josh
xu Posted - Sep 05 2008 : 10:46:35 AM
Josh,

Which command can I check FreeSurfer version?

Thanks,

Amy

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