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 Freesurfer updated to v 4.0.2		  New Topic  Reply to Topic
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josh.bizzell
BIAC Staff

USA
118 Posts
Posted - Apr 01 2008 :  2:13:01 PM  Show Profile  Reply with Quote
I have updated Freesurfer on all of the nodes from version 4.0.0 to version 4.0.2. Please let me know if you encounter any errors.

Note: It appears that Freesurfer is still crashing on node6. I have yet to figure out what is causing this, but in the mean time, you should avoid node6 when running Freesurfer jobs.

-Josh

xu
Junior Member

25 Posts
Posted - Sep 05 2008 :  10:46:35 AM  Show Profile  Reply with Quote
Josh,

Which command can I check FreeSurfer version?

Thanks,

Amy
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josh.bizzell
BIAC Staff

USA
118 Posts
Posted - Sep 05 2008 :  10:57:47 AM  Show Profile  Reply with Quote
Amy,

From the interact queue, typing the following command will tell you which version of freesurfer is being used:
cat $FREESURFER_HOME/build-stamp.txt

Or, you can add that line to your grid engine scripts to get it to print the version to your log file.

-Josh
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josh.bizzell
BIAC Staff

USA
118 Posts
Posted - Sep 19 2008 :  4:32:22 PM  Show Profile  Reply with Quote
All,

I'm thinking about updating Freesurfer to version 4.0.5 soon, maybe on Monday (Sept. 22). It'd be best if there were no Freesurfer jobs running when I do this, so unless it's a problem, please don't submit any new jobs that might still be running on Monday.

Thanks!
Josh
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josh.bizzell
BIAC Staff

USA
118 Posts
Posted - Sep 19 2008 :  5:11:15 PM  Show Profile  Reply with Quote
By the way, I fixed the permissions problem with node6, so you should feel free to run Freesurfer on any node.

-Josh
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