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ckim
BIAC Alum

10 Posts
Posted - Mar 30 2007 :  08:18:38 AM  Show Profile  Reply with Quote
Where can I download the BIAC tools? I found the link to the .zip file on the wiki but it doesn't work.

petty
BIAC Staff

USA
453 Posts
Posted - Mar 30 2007 :  09:15:29 AM  Show Profile  Reply with Quote
if you mean the bxh tools: http://www.biac.duke.edu/home/gadde/bxh_xcede_tools_1.8.33_linux.tgz

if you mean the BIAC matlab toolbox: \\Gall\Programs\MATLAB\BIAC_matlab_20070223_ver3.1.1.zip
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smhayes
New Member

21 Posts
Posted - May 10 2007 :  2:18:44 PM  Show Profile  Reply with Quote
Is there any "environment" info I can add to my .bashrc so that I can launch the biac tools w/o typing the entire filepath (or being located in the bin directory)? I've checked the README and the usermanual, but didn't see anything. I'm not particularly familiar w/ Linux, so the only solution I have is to use aliases in the .bashrc, but that doesn't seem like a great solution. Can someone send me this info?
Thanks,
Scott
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syam.gadde
BIAC Staff

USA
421 Posts
Posted - May 10 2007 :  3:02:25 PM  Show Profile  Reply with Quote
You can try:

export PATH=${PATH}:/my/path/to/BIAC/tools/bin

in your .bashrc.
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tankersley
BIAC Alum

USA
143 Posts
Posted - Jun 13 2007 :  6:14:19 PM  Show Profile  Reply with Quote
I'm having trouble using readmr for bxh files. I can load nii.gz files, but not bxh.
I've tried addpath addpath \\gall\programs\MATLAB\BIAC_matlab_ver_3.0.11 and \\gall\programs\MATLAB\BIAC, but still get the following error:

data=readmr('run005_01.bxh')
Type of argument is struct
??? Error using ==> readmr
Error using ==> readbxhhdr
Expected string argument.

I get the same error when I try to use the readbxhhdr command.
Have I inadvertently reset something?

Thanks,

Dharol
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syam.gadde
BIAC Staff

USA
421 Posts
Posted - Jun 14 2007 :  09:27:05 AM  Show Profile  Reply with Quote
That is strange. You should only need the following:

\\gall\programs\MATLAB\BIAC\general
\\gall\programs\MATLAB\BIAC\mr

in your MATLAB path. You should not mix version 3.0.11 in there. Has anyone else experienced this problem?
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tankersley
BIAC Alum

USA
143 Posts
Posted - Jun 14 2007 :  12:41:08 PM  Show Profile  Reply with Quote
Thanks Syam.
I didn't have the last part of the path \mr and \general, but these fix the problem.

Dharol
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