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syam.gadde
BIAC Staff
USA
421 Posts |
 Posted - Dec 11 2006 : 5:52:35 PM
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Version 3.1.0 of the BIAC MATLAB Tools has been released and installed in \\gall\programs\MATLAB\BIAC. The included .mex files are only expected to work with MATLAB 7 on Windows machines, MATLAB 6.5 or 7 on Linux, or MATLAB 6.5 on AIX (e.g. golgi). Other versions/environments will require re-compilation of the .mex files using buildmex.m, buildmex.bat or buildmex.sh.
Important updates: - Native NIfTI-1 (.nii) and compressed NIfTI-1 (nii.gz) support in readmr and support for compressed NIfTI-1 data wrapped with BXH headers (reading compressed data only works reliably with MATLAB 7 due to Java issues)
- Native MATLAB (non-compiled non-.mex) versions of readxml and writexml are provided for use when the compiled versions are unavailable. They are very slow.
- Data wrapped with XCEDE (BIRN's XML format, based on the BXH format) files are supported by readmr.
- showsrs2 now displays RAS/LPI labels at edges of images if this information is available in the image headers.
- showsrs2 supports a new flag 'DELAYINTERP' to help save memory when loading large datasets
- showsrs2 now supports 2D clustering
- Many bug fixes and much code cleanup.
The last version of the tools is still available in \\gall\programs\MATLAB\BIAC_matlab_ver_3.0.11 if you need it. All older releases are also available in that directory in .zip archives.
These will be installed as the default on golgi soon.
The testing directory \\gall\programs\User_Scripts\BIAC_matlab_ver3.1.0_test will be removed before the end of this week.
To report any bugs with the new version of the tools, please post to the Analysis Software Support forum at http://www.biac.duke.edu/forums/forum.asp?FORUM_ID=7 |
Edited by - syam.gadde on Dec 11 2006 5:56:07 PM |
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Feb 23 2007 : 5:04:42 PM
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Version 3.1.1 of the BIAC MATLAB tools has been released and installed in \\gall\programs\MATLAB\BIAC. This releases fixes a minor bug in writemr, which causes only one volume to be written out to a .bxh file when using the "wildcard" functionality (to write individual .img volumes).
The previous version of the tools is available in \\gall\programs\MATLAB\BIAC_matlab_20070223_ver3.1.0 |
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Mar 26 2007 : 11:33:30 AM
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| \\gall\programs\User_Scripts\BIAC_matlab_ver3.1.0_test will be removed soon as this is now out-of-date. If you are still adding this directory to your path, please use the standard up-to-date release in \\gall\programs\MATLAB\BIAC instead. Thanks. |
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Jul 16 2007 : 5:56:51 PM
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Version 3.1.2 of the BIAC MATLAB tools has been released and installed in \\gall\programs\MATLAB\BIAC. The previous version of the tools is available in \\gall\programs\MATLAB\BIAC_matlab_20070223_ver3.1.1
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----- Changes from Version 3.1.1 to 3.1.2 -------
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mr/readmrgui.m
- fix a minor bug in a clear statement
mr/readmr.m
- minor fix indexing origin value from readmrhdr
mr/showsrs2.m
- turn off subscripts for underscores in legend labels
- update for later versions of MATLAB
mr/showsrs2_goto.m
- new tool to remotely control a showsrs2 window to display
a different coordinate
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Jul 23 2007 : 4:47:44 PM
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Version 3.1.3 of the BIAC MATLAB tools has been released and installed in \\gall\programs\MATLAB\BIAC. The previous version of the tools is available in \\gall\programs\MATLAB\BIAC_matlab_20070723_ver3.1.2
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----- Changes from Version 3.1.2 to 3.1.3 -------
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mr/showsrs2.m
- Deal better with the fact that the 'Interpreter' property in figures
does not exist in earlier versions of MATLAB.
Removed files: EEGad/info.xml general/info.xml mr/info.xml
(This has been installed on golgi in /usr/local/MATLAB/BIAC-3.1.3 and is added to your path by default if you have not set the BIACMATLABROOT environment variable.)
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Edited by - syam.gadde on Jul 23 2007 5:08:46 PM |
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Jul 31 2007 : 3:25:46 PM
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Version 3.1.4 of the BIAC MATLAB tools has been released and installed in \\gall\programs\MATLAB\BIAC. The previous version of the tools is available in \\gall\programs\MATLAB\BIAC_matlab_20070723_ver3.1.3.
There is only one update (of a Java class) in this release, having to do with reading compressed data with readmr.
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----- Changes from Version 3.1.3 to 3.1.4 -------
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java/edu/duke/biac/matlabInputStream.java
- Fix bit manipulation bug when converting from compressed data
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Mar 25 2008 : 11:09:22 AM
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Version 3.1.4.1 of the BIAC MATLAB tools has been released and installed in \\gall\programs\MATLAB\BIAC. The previous version of the tools is available in \\gall\programs\MATLAB\BIAC_matlab_20070731_ver3.1.4 .
This release has also been installed as default on golgi.
There is only one update to this release (note that this means you need to be logged-in to fatt using cifslogin if you use findexp or chexp on golgi):
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----- Changes from Version 3.1.4 to 3.1.4.1 -------
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general/findexp.m
- Moving BIAC experiment database files from huxley to fatt
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Edited by - syam.gadde on Mar 25 2008 11:13:24 AM |
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Apr 24 2009 : 08:54:03 AM
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Version 3.1.4.2 of the BIAC MATLAB tools has been released and installed in \\hill\data\BIAC\Programs\MATLAB\BIAC. The previous version of the tools is available in \\hill\data\BIAC\Programs\MATLAB\BIAC_matlab_20070731_ver3.1.4.1 .
The major update is new showsrs2 functionality from Josh.
If you encounter any problems with this release, please post to this forum: http://www.biac.duke.edu/forums/forum.asp?FORUM_ID=7
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----- Changes from Version 3.1.4.1 to 3.1.4.2 ---
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startup-stub.m
- Move standard BIAC program location from gall to hill
mr/createmrstruct.m
- Add support for Linux 64-bit
mr/readmr.m
- add labels for dimensions beyond 4
mr/showsrs2_cfgtrans.m
- Added ability to show/hide all overlays with one button click.
mr/showsrs2.m, mr/showsrs2_cfg.m
- Added overlay by overlay masking options
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syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Feb 24 2011 : 12:17:14 PM
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Version 3.1.5 of the BIAC MATLAB tools has been released and installed in \\munin\data\Programs\MATLAB\BIAC. The previous version of the tools is available in \\munin\data\Programs\MATLAB\BIAC_matlab_20070731_ver3.1.4.3 .
The major update is RGB support for showsrs2.
If you encounter any problems with this release, please post to this forum: http://www.biac.duke.edu/forums/forum.asp?FORUM_ID=7
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----- Changes from Version 3.1.4.3 to 3.1.5 ---
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showsrs2.m, datarec2mrinfo.m
- Added support for RGB data
readbxhhdr.m
- Fix to enable reading filenames that are completely numeric
buildmex.m
- Fix for Mac paths
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BIAC Matlab Tools 3.1.0 released
Topic Locked
