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Adria
New Member

19 Posts
Posted - Dec 14 2011 :  10:12:21 AM  Show Profile  Reply with Quote
I was wondering if it was possible to edit my script to distribute the workload to different nodes to make processing time quicker. For example, if I wanted to give each patient brain a node for itself.

Thank you.

syam.gadde
BIAC Staff

USA
421 Posts
Posted - Dec 14 2011 :  10:21:31 AM  Show Profile  Reply with Quote
Every qsub submission will be distributed to a random node. So if you separate your job into separate qsub jobs, it can be run in parallel. If you are talking about getting a particular piece of software to do it, it depends on the software. For example, some FSL commands will do some things in parallel if you put something like this before running it:
export FSLSUBMIT=1
Here is a link to the FSL commands that might take advantage of this http://www.fmrib.ox.ac.uk/fsl/fsl/sgesub.html
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