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aawineco
Junior Member

USA
31 Posts
Posted - Sep 24 2010 :  3:33:57 PM  Show Profile  Reply with Quote
I want to look in my profile to see if I have code that is pointing to the wrong paths in fsl. I'm pretty sure I've done this before fairly recently, but when I type in nedit .bash_profile at the command line on the cluster, it cannot find the file. Any suggestions?

petty
BIAC Staff

USA
453 Posts
Posted - Sep 25 2010 :  07:47:24 AM  Show Profile  Reply with Quote
Are you in your home directory when you're trying to open the file?

try nedit ~/.bash_profile ... or to list all the files in your directory (even hidden files): ls -la ~/


Also, on the cluster the fsl path is being set to 4.1.5 in a shell script for everyone on login to the compute nodes. If you want to use a different version you'll need to export the new FSLDIR, resource their configuration script (. ${FSLDIR}/etc/fslconf/fsl.sh) and then call the utilities with the fullpath (ie: $FSLDIR/bin/feat)
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