| Author |
 Topic  |
|
|
djp16
Starting Member
9 Posts |
 Posted - Mar 29 2010 : 09:46:00 AM
|
Hi,
Not sure if I should be doing something different, but using qinteract gives me access to a node, but it seems to be a mirror of my hugin home directory and not the location where I can access my experiment directory.
thanks,
david |
|
|
josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - Mar 29 2010 : 10:00:28 AM
|
David,
You will still need to use the "lnexp" command to mount your experiment directory:
lnexp MyExperiment.01
It will then mount it to your home directory under the "experiments" folder (this folder will be created if it is not there), like with the old interact queue.
Josh |
 |
|
|
petty
BIAC Staff
USA
453 Posts |
Posted - Mar 29 2010 : 10:44:09 AM
|
| All the nodes share the same HOME directories so that all your contents will be available ... this way you don't have to copy scripts/etc to the interactive nodes. You'll also be able to see your logs while your scripts are being run. |
Edited by - petty on Mar 29 2010 10:47:18 AM |
|
|
|
djp16
Starting Member
9 Posts |
Posted - Mar 29 2010 : 12:34:03 PM
|
this clears things up.
Once lnexp was executed the "experiments" directory appeared, along with my experiment directory.
thanks,
david |
|
|
|
djp16
Starting Member
9 Posts |
Posted - Mar 29 2010 : 2:45:28 PM
|
Additional problem....
I can't change the permissions of the scripts in my Scripts directory to executable. I've tried running interactively and as a job sent from the head node. Please help.
Thanks,
david p. |
|
|
|
mcarter
New Member
22 Posts |
Posted - Mar 29 2010 : 2:48:02 PM
|
Even if you can't set them as executable, you can call them using
>>bash my_script |
|
|
|
syam.gadde
BIAC Staff
USA
421 Posts |
Posted - Mar 29 2010 : 2:48:42 PM
|
My experience has been that changing the executable bit on BIAC filesystems is not always possible, depending on the server. However, you can always call the interpreter directly, by prepending the call with the name of the interpreter:
bash script.sh
perl script.pl
etc.
|
|
|
| |
Topic |
|
qinteract
