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dvsmith
Advanced Member
USA
218 Posts |
 Posted - Aug 13 2008 : 1:04:32 PM
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How long are you guys planning on waiting before upgrading FSL? I'm wondering because of the recent problems NaNs and having to revert back to my old mask fix. I did some beta testing of 4.1 on MacBook a few weeks ago and I did not encounter any problems.
Thanks,
David
http://www.fmrib.ox.ac.uk/fsldownloads/
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Edited by - dvsmith on Aug 13 2008 1:05:31 PM |
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josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - Aug 14 2008 : 3:19:17 PM
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David,
I've installed FSL 4.1 on all of the nodes. However, I didn't make it the default version (installed under /usr/local/fsl - which is still 4.0.3), because it appears folks will need to re-create their .fsf files for it to work properly. If you want to use 4.1 in your cluster scripts, you should add the following lines to your script:
FSLDIR=/usr/local/fsl-4.1.0-centos4_64
export FSLDIR
source $FSLDIR/etc/fslconf/fsl.sh
-Josh |
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mullette-gillman
Junior Member
USA
40 Posts |
Posted - Sep 08 2008 : 08:54:28 AM
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| Is there any plan on when we'll swap over the cluster to make 4.1 the default? |
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mullette-gillman
Junior Member
USA
40 Posts |
Posted - Sep 12 2008 : 09:06:06 AM
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Has anyone had success running FSLview under FSL 4.1.0?
I receive the error:
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/usr/local/fsl-4.1.0-centos4_64/bin/fslview_bin: error wile loading shared libraries: libqwt.so.4: cannot open shared object file: No such file or directory
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I take that to mean there is an error with the 4.1.0 install and this file is missing? |
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petty
BIAC Staff
USA
453 Posts |
Posted - Sep 12 2008 : 09:29:21 AM
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| works on my linux machine, and should work now through node4 .. try it again. |
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mullette-gillman
Junior Member
USA
40 Posts |
Posted - Sep 12 2008 : 09:43:59 AM
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Works now. I take it something had to be changed?
Thank you!
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petty
BIAC Staff
USA
453 Posts |
Posted - Sep 12 2008 : 10:02:14 AM
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that was just a bandaid, some libraries were missing from their build. the newest libraries are being downloaded and tested, they'll be installed once they work.
but it should work for now |
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josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - May 20 2009 : 1:45:48 PM
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I've installed FSL 4.1.3 on all cluster nodes. You can use it by adding the following lines to your cluster scripts for batch jobs, or to your .bash_profile file for the interactive queue:
FSLDIR=/usr/local/fsl-4.1.3-centos4_64
export FSLDIR
source $FSLDIR/etc/fslconf/fsl.sh
-Josh |
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clithero
Junior Member
37 Posts |
Posted - Jun 08 2009 : 11:39:35 AM
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Hey guys,
I think some of the issues some people have been experiencing will be fixed with FSL 4.1.4. Would it be possible to get this installed soon?
Thanks!
John |
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josh.bizzell
BIAC Staff
USA
118 Posts |
Posted - Jun 22 2009 : 10:01:00 AM
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FSL 4.1.4 has been installed on all nodes. Add the following lines to your cluster scripts or .bash_profile on the interactive queue to run this version:
FSLDIR=/usr/local/fsl-4.1.4-centos4_64
export FSLDIR
source $FSLDIR/etc/fslconf/fsl.sh
Josh |
Edited by - josh.bizzell on Jun 22 2009 10:01:23 AM |
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dvsmith
Advanced Member
USA
218 Posts |
Posted - Aug 11 2009 : 9:21:00 PM
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FYI: when you're running feat within a batch script or simply calling it from the command line (i.e., feat <yourtemplate>.fsf), make sure you call the feat program using the full path (i.e., $FSLDIR/bin/feat). Not doing this caused problems for me and some other folks in our lab recently (see http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1315).
David |
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FSL 4.1
