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 Is there a way to use BIAC QA on the cluster?		  New Topic  Reply to Topic
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Bethany
BIAC Alum

37 Posts
Posted - Apr 24 2008 :  6:42:57 PM  Show Profile  Reply with Quote
I know that plans were in the works to get the BIAC QA function running on the cluster. I was wondering if this is up and running yet, and if so how I would go about running QA on the cluster.

Thanks!

syam.gadde
BIAC Staff

USA
421 Posts
Posted - Apr 25 2008 :  09:18:23 AM  Show Profile  Reply with Quote
Yes, indeed there is. It's the same as if you were running it manually on golgi (except that this needs to be in a script submitted to the cluster):

fmriqa_generate.pl input1.bxh input2.bxh... outputdir

So, you could do:

cd ${EXPERIMENT}/Data/Func/2007XXXX_YYYYY
fmriqa_generate.pl run*/run*.bxh QA

You can also use the --overwrite flag if you want to overwrite things without removing them first. Run fmriqa_generate.pl without arguments on the head node or interactive node to get all the options.
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Bethany
BIAC Alum

37 Posts
Posted - Apr 29 2008 :  5:59:26 PM  Show Profile  Reply with Quote
Great! Thank you.

Question 2: I heard there was something in the works to let us exclude the first few timepoints from the QA (for those of use who aren't using distaqs). Is there something like that ready yet?

Thanks!
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syam.gadde
BIAC Staff

USA
421 Posts
Posted - Apr 29 2008 :  6:08:14 PM  Show Profile  Reply with Quote
The timepoint selection for the QA is available on golgi, but I don't believe that version is installed on the cluster yet. To be sure, you can run fmriqa_generate.pl without arguments to get the help message, and see if it has the --timeselect option.
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