| T O P I C R E V I E W |
| jamie.morris |
Posted - Sep 20 2005 : 6:42:35 PM
I am trying to process some older data (8-9 months) with eventstats. I have made xml files from the subject pdimfiles and am running it the same way I normally do, but am getting the following error:
image file /home/morris/net/katz/data/Biomot.11/Data/Func/20041217_44139/sncrarun005_02/sncrarun005_02.bxh
event file(s) /home/morris/net/katz/data/Biomot.11/Notes/outfiles/run2.xml
Unable to read TR from image header!
Anyone know a fix?
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| 9 L A T E S T R E P L I E S (Newest First) |
| petty |
Posted - Jun 29 2006 : 5:00:30 PM
it means that your X-Win32 connection was lost, and that your monitor is no longer associated with your unix session. if you just re-open X-win, and open another SSH connection everything should be back.
it just happens every once and a while |
| nishkian |
Posted - Jun 29 2006 : 4:55:40 PM
Another problem with eventstats:
When I try to nedit parsinginfo.txt in my eventstats folder, I am now recieving the following error:
X connection to localhost:15.0 broken (explicit kill or server shutdown).
What does this mean? Thanks! |
| syam.gadde |
Posted - Jun 27 2006 : 5:12:25 PM
Also useful is this page, describing how to set up your SSH connection to golgi:
http://www.biac.duke.edu/library/documentation/fsecure/ConnectToGolgi.html
In particular, the checkbox marked "Tunnel X11 connections". |
| jamie.morris |
Posted - Jun 27 2006 : 5:06:05 PM
I'm assuming that you have already set up your X-Win. If not, you will need to do that. You can find info here:
http://www.biac.duke.edu/library/documentation/xwin32/GolgiGraphics.html
Even if you have done this before, you might want to check your settings to verify that they haven't been changed somehow. |
| nishkian |
Posted - Jun 27 2006 : 5:03:36 PM
I'm having a problem in eventstats which I'm hoping someone can help me with.
After having cd ~/net/goldman/data/BIAC/RiskTime.01/Analysis/eventstats
And starting X-win32
I am unable to nedit batches
And am presented with the following error message: NEdit: Can't open display
I tried this out on another computer, and it still didn't work.
Thanks! |
| syam.gadde |
Posted - Sep 21 2005 : 10:16:09 AM
And the reason your older files didn't have TR may have something to do with how bputil used to transfer metadata from one stage of the pipeline to the next. I believe current versions maintain the <tr> element if the original input files have it. |
| syam.gadde |
Posted - Sep 21 2005 : 10:13:25 AM
bxh_eventstats looks for the TR in the <acquisitiondata> section, in an element called <tr>. So:
<acquisitiondata>
...
<tr>2000</tr>
...
</acquisitiondata>
If the "forcetr" option is used, like Chris said, it will override the TR info in the BXH file (if any). |
| petty |
Posted - Sep 20 2005 : 7:28:33 PM
jamie add this to your options file:
forcetr 1.5 (or 2, or whatever your TR is)
this will force eventstats to ignore the info in the header and just use 1.5 |
| jamie.morris |
Posted - Sep 20 2005 : 6:49:15 PM
I should mention that I just tried placing a line in the BXH file that gives it the TR info, but this didn't seem to help. Do the current headers have more info than the old headers? |
