All Forums  Support Forums  Analysis Software Support  Processing on the p670 (update)

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Screensize: 640 x 480 800 x 600 1024 x 768 1280 x 1024 UserName: Password: Format Mode: Basic  Help  Prompt  Format: Font Andale Mono Arial Arial Black Book Antiqua Century Gothic Comic Sans MS Courier New Georgia Impact Lucida Console Script MT Bold Stencil Tahoma Times New Roman Trebuchet MS Verdana   Size 1 2 3 4 5 6   Color Black Red Yellow Pink Green Orange Purple Blue Beige Brown Teal Navy Maroon LimeGreen Message: * HTML is OFF * Forum Code is ON Smilies [quote][i]Originally posted by jimmy.dias[/i] [br]p670 users, Scripts on the p670 are now available for the following processing steps: [red]tralign[/red] [red]motioncorrect[/red] [red]coregister[/red] [red]coreg_normalize[/red] [red]normalize[/red] [red]smooth[/red] Each of these scripts are basically command line interfaces to SPM99 routines. Each script requires at a minimum a valid BXH header + the functional data you are processing on as its input. Please view the help for information on what each script does and how to use each script by doing the following: <program name> --help e.g. [dias@golgi: ~/net/huxley/data] $ [green]tralign --help[/green] All these scripts and the programs each require should already exist in your path. For those of you who have been using the scripts within the last month or so, I've changed the command line interface slightly so that specification of the anatomical directory is done using [purple]--anatglob[/purple] or [purple]-a[/purple]. Please make sure you update your batch scripts accordingly. Enjoy! Jimmy [/quote]   Check here to include your profile signature. Check here to subscribe to this topic.