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Screensize: 640 x 480 800 x 600 1024 x 768 1280 x 1024 UserName: Password: Format Mode: Basic  Help  Prompt  Format: Font Andale Mono Arial Arial Black Book Antiqua Century Gothic Comic Sans MS Courier New Georgia Impact Lucida Console Script MT Bold Stencil Tahoma Times New Roman Trebuchet MS Verdana   Size 1 2 3 4 5 6   Color Black Red Yellow Pink Green Orange Purple Blue Beige Brown Teal Navy Maroon LimeGreen Message: * HTML is OFF * Forum Code is ON Smilies [quote][i]Originally posted by jimmy.dias[/i] [br]p670 users, AIR 5.2.5 is now available on the p670 under /usr/local/AIR5.2.5. For those of you who would like to use AIR for motion correction, I wrote a script called [red]motioncorrect[/red] that simplifies the process. Usage Info: motioncorrect [-Dv] [-i input] [-r rundir] -b bxhfile -D debug mode, only prints configuration information -v verbose mode Usage Example: [dias@volta: /data] [green]motioncorrect -Dvi Test.01/20030410_04498/ -b run004_02.bxh -r run004_02[/green] Note the following: [list][*]The resulting [i]air004_02[/i] directory is at the same level as the original run directory. e.g. from the above example: [i]Test.01/20030410_04498/air004_02[/i].[/*][*]Default values for derivation of registration parameter file are as follows: [list][*]uses rigid body 6 parameter model for 3d model[/*][*]cost function: least squares with intensity rescaling[/*][*]threshold of a 1000 for std file and reslice file[/*][/list][/*][*]For those of you who don't need the above helper script, see AIR man pages http://bishopw.loni.ucla.edu/AIR5/howtomri.html for detailed option information.[/*][/list] For more script help, [green]motioncorrect -h[/green] at the prompt. For those of you who do not have access to the p670 and are interested in obtaining the [red]motioncorrect[/red] source, email me at dias@biac.duke.edu. [/quote]   Check here to include your profile signature. Check here to subscribe to this topic.