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T O P I C    R E V I E W
meyer Posted - Jul 29 2008 : 09:32:47 AM
Is it possible to use fmriqa_generate on FSL preprocessed data? I've written out bxh files using readmr/createmrstruct/writemr but fmriqa_generate is failing when I try to run QA on these bxh files.

Thanks,
Justin
2   L A T E S T    R E P L I E S    (Newest First)
meyer Posted - Jul 29 2008 : 09:50:59 AM
It must have been a problem with how I was outputting the files in Matlab. Everything works fine if I generate the bxh files using fslwrapbxh. Thanks!
syam.gadde Posted - Jul 29 2008 : 09:45:07 AM
Yes, you should be able to run QA on any .bxh files. What errors are you getting?

I wrote a script called fslwrapbxh which takes paths on the command line and will wrap any .nii or .nii.gz file it finds under those paths (even in subdirectories) with a .bxh file, so you wouldn't have to do it in MATLAB, unless you are doing other preprocessing there...

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