| T O P I C R E V I E W |
| jimmy.dias |
Posted - Dec 13 2007 : 11:00:21 AM
Hey all,
So in order to fix your mounts on Golgi to the Netapp boxes (Huxley, Hodgkin, Katz) you'll need to do the following:
1) Make sure you are not logged into any of the servers:
[dias@golgi: ~] $ cifslogout huxley
[dias@golgi: ~] $ cifslogout hodgkin
[dias@golgi: ~] $ cifslogout katz
2) remove the existing symbolic links
[dias@golgi: ~] $ rm ~/net/huxley/data
[dias@golgi: ~] $ rm ~/net/hodgkin/data
[dias@golgi: ~] $ rm ~/net/katz/data
3) run lnshares to re-create symbolic links for Netapp boxes that point to CIFS mounts instead of NFS
[dias@golgi: ~] $ lnshares
4) Re-login to Netapp servers.
[dias@golgi: ~] $ cifslogin huxley
[dias@golgi: ~] $ cifslogin hodgkin
[dias@golgi: ~] $ cifslogin katz
|
| 15 L A T E S T R E P L I E S (Newest First) |
| wang |
Posted - Jan 14 2008 : 3:58:22 PM
Thanks Syam! There was an error in my previous scripts. Could you please kill all the running scripts for me? Thanks a lot.
Lihong |
| syam.gadde |
Posted - Jan 14 2008 : 3:55:42 PM
You have a lot of processes running, and may have hit the process limit (which seems to be 128, which seems small to me). You won't be able to create any new processes until other processes exit. Eventually they should exit and free up resources. If you want me to kill some of your processes, you can contact me. |
| wang |
Posted - Jan 14 2008 : 3:43:52 PM
Is golgi temporarily down or it's only my setting?
I opened a second terminal in golgi, but run a script which was conflict with the script running on the first terminal. As soon as I turned off the second terminal, I got an error message: Server responded "fork failed:Resource temporarily unavailable". My first terminal was turned off automatically. When I was trying to reconnect to golgi, it always says "fork failed:Resource temporarily unavailable". Any insights on the problem? Thanks.
Lihong |
| wang |
Posted - Jan 07 2008 : 3:32:56 PM
No, I only did the first and the last step cifslogout huxley and cifslogin huxley. I didn't realize that I had the net/huxley/data symblic link. By doing the 4 steps, it worked out now. Thanks so much Francis!
|
| francis.favorini |
Posted - Jan 07 2008 : 2:47:52 PM
Lihong,
Did you do all 4 steps in the order specified in Jimmy's original post above?
|
| wang |
Posted - Jan 07 2008 : 10:56:32 AM
It seems I can mount on goldman but not huxley or katz although I've tryied cifslogout and cifslogin many times. Recall back Chuck's posthttp://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=252&SearchTerms=cifs
he mentioned that huxley even does not need to cifslogin because it is connected to golgi using NFS rather than Windows Networking (this may have changed?), I am wondering whether something is wrong in the NFS system or only with some accounts? Any idea why I can not see any content under huxley/data or katz/data? Thanks.
|
| wang |
Posted - Dec 28 2007 : 1:43:14 PM
Thanks Jimmy. I tried cifslogout and cifslogin, but got the same results. I did not get any complain for cifslogin,I was connected to huxley/data, but I cannot see the directories under data. |
| jimmy.dias |
Posted - Dec 28 2007 : 1:29:55 PM
Perhaps try cifslogout and cifslogin back into that particular server. I can list Huxley contents from Golgi just fine so the connection should be ok. |
| wang |
Posted - Dec 28 2007 : 11:14:02 AM
A different question: I can get access to huxley/data, but I cannot get acess to huxley/data/OddEmotion.04. When I ls to list the conent inside huxley/data, it's empty. Is it something wrong with connection of huxley to golgi? I can get acess to OddEmotion.04 from windows without a problem. Thanks.
|
| aawineco |
Posted - Dec 28 2007 : 11:08:38 AM
Nevermind. It didn't like that my windows password was different from my golgi password. |
| aawineco |
Posted - Dec 28 2007 : 11:03:39 AM
I tried to do what was suggested below, but still when I typed in my password on goldman I was denied access. Any more suggestions? |
| mullette-gillman |
Posted - Dec 18 2007 : 1:46:35 PM
Thank you! I connected to goldman and then it worked. |
| jimmy.dias |
Posted - Dec 18 2007 : 1:20:42 PM
Logging in to Huxley is required by anyone wanting to run bputil since bputil looks on Huxley for a file that maps valid experiments to the storage directory which contains that experiments data.
In CEV.01's case, the storage directory is on Goldman as indicated by Experiment Location in bputil's menu. You'll need to verify that you are logged into that server in order for bputil to find your data.
To see which servers you are currently logged into:
prompt> cifslist | grep mullette
To test whether or not the cifslogin had worked, you can also try listing the contents of the Experiment Location displayed by bputil. What you see is what bputil will see.
For Example:
prompt> ls ~/net/goldman/data/BIAC/CEV.01
should return at least a 'Data' directory.
Jimmy |
| mullette-gillman |
Posted - Dec 18 2007 : 12:57:55 PM
Hello again,
There is still an issue, when I try to select my experiment for bputil, I am told that it cannot find my exams. I have copied the text:
---------------------------------------------------
* Logged in as mullette
---------------------------------
1) Experiment Name Selected.
Experiment Name => CEV.01
Experiment Location => /home/mullette/net/goldman/data/BIAC
2) Instruction Set Selected.
BIAC QA
3) Select Exam.
4) Select Functionals.
5) Select Anatomicals.
6) Select Processing Preferences.
7) Submit Processing Jobs and Exit.
8) Exit.
Enter option (1..8): 3
Checking Func/* for exam matches
Checking Anat/* for exam matches
ERROR! Exams Not Found for Experiment CEV.01!!
Press return to continue...
[mullette@golgi: ~] $
|
| mullette-gillman |
Posted - Dec 18 2007 : 12:53:17 PM
This worked for me. Will I need to log into these servers each time, or was it just to recreate the symbolic links?
Thank you! |
