| T O P I C R E V I E W |
| vinod |
Posted - Jul 23 2007 : 3:52:31 PM
Are the default BIAC tools on golgi the same as the ones on gall? I am asking this question because I can open some of the FSL output files using readmr when I am running matlab locally but it doesnt work from golgi.
Vinod |
| 7 L A T E S T R E P L I E S (Newest First) |
| josh.bizzell |
Posted - Jul 23 2007 : 5:44:15 PM
If you use the help command at the Matlab command prompt, you'll get a description of all the tools in a particular folder (if there is a Contents.m file):
>> help \\Gall\Programs\MATLAB\BIAC\mr
-Josh |
| syam.gadde |
Posted - Jul 23 2007 : 4:41:12 PM
In the "general" and "mr" subdirectories of the tools are Contents.m files, which should have all the functions listed. I think these are supposed to interface with the MATLAB help system, but not sure how. |
| vinod |
Posted - Jul 23 2007 : 4:32:55 PM
The "gall" copy works fine for me.
On a similar note, is there a compilation/documentation of all the BIAC tools available? If not detailed help, atleast a list of names with a one-line description of what the function does? I have come across a lot of useful functions like readmr, showsrs2, overlay2 etc. by hearing it being mentioned by other people and I am sure there are other similar useful functions available that I am not even aware of! |
| syam.gadde |
Posted - Jul 23 2007 : 4:24:22 PM
Sorry, my bugfix release was to the "gall" copy. The version in /usr/local/MATLAB is older. You can use the latest "gall" version by executing the following:
export BIACMATLABROOT=${HOME}/net/gall/programs/MATLAB/BIAC
env MATLAB_JAVA=/usr/java14/jre matlab -jvm
I have been using this with success, and if this works for you and others we can make this the default on golgi. |
| syam.gadde |
Posted - Jul 23 2007 : 4:18:50 PM
I have just released a fix to showsrs2 that affected early versions of MATLAB (like the one installed on golgi). Let me know if that your problem. |
| vinod |
Posted - Jul 23 2007 : 4:18:45 PM
Sorry, here it is.. And I run the exact same command in the same data directory from gall and it works fine.
>> data = readmr('cope1_std.nii.gz');
??? Error using ==> readmr
Can't figure out type for file "cope1_std.nii.gz"
>> which readmr
/usr/local/MATLAB/BIAC/mr/readmr.m
|
| syam.gadde |
Posted - Jul 23 2007 : 4:00:18 PM
Please post more details about the problem. Do you get error messages? |
